As I stood in my kitchen one busy afternoon, the craving hit hard for something warm, savory, and guilt-free. That’s when I fell back on a recipe that’s become a delightful staple in our home: Air Fryer High-Protein Bagel Bites. Ready in just 15 minutes, these little rounds of goodness are not only quick to whip up, but they also cater wonderfully to gluten-free diets while delivering a satisfying protein boost. With a creamy burst of cream cheese waiting inside each bite, they steal the show as the perfect snack or adding a fun twist to your meal prep. Curious to learn how to turn basic pantry ingredients into these flavorful gems? Let’s dive in!

Why Are These Bagel Bites So Amazing?
Quick and Easy: With only 15 minutes needed, this recipe transforms simple ingredients into a delicious snack in no time!
High-Protein Benefit: Each bite offers around 8g of protein, making these not just tasty but also a nutritious choice.
Gluten-Free Delight: Designed for gluten-free diets, they provide a guilt-free alternative to traditional bagels.
Versatile Options: Customize your bites with different flavored cream cheeses or seasonings; the sky’s the limit!
Crowd-Pleasing: Perfect for any occasion, whether as a snack for the family or an appetizer at parties. Try serving them alongside Cranberry Cream Bites for an extra treat.
High-Protein Bagel Bites Ingredients
For the Bagel Base
• Gluten-Free Flour – Provides the necessary structure; choose brands with xanthan gum for the best texture.
• Baking Powder – A key leavening agent for light, fluffy bites; make sure it’s fresh for optimal rise.
• Protein Powder – Unflavored is ideal; if using vanilla, reduce sweeteners to keep flavors balanced.
• Greek Yogurt – Adds moisture and protein; opt for the thickest variety for the perfect bagel texture.
For the Creamy Filling
• Cream Cheese – The centerpiece of flavor; use block-style cream cheese, cold for easy handling.
For Topping & Finish
• Everything But The Bagel Seasoning – Essential for that iconic bagel taste; sprinkle generously for maximum flavor.
• Egg (optional) – Use for egg wash to give your bagel bites a glossy finish; helps toppings stick better.
These high-protein bagel bites are your ticket to enjoying a homemade snack that’s healthier and fulfills your cravings with delightful creaminess!
Step‑by‑Step Instructions for High-Protein Bagel Bites
Step 1: Preheat the Air Fryer
Begin by preheating your air fryer to 350°F (175°C) for about 5 minutes. This is crucial, as a well-heated fryer ensures that your high-protein bagel bites cook evenly and develop a lovely golden exterior. Once heated, you’ll be ready to prepare the bagel dough!
Step 2: Combine Dry Ingredients
In a large mixing bowl, combine 1 cup of gluten-free flour, 1 scoop of protein powder, 1 tablespoon of baking powder, and a pinch of salt. Stir these dry ingredients together thoroughly, ensuring that there are no clumps. This mixture forms the base of your bagel bites, setting the stage for their delicious taste and texture.
Step 3: Add Greek Yogurt
Next, incorporate ¾ cup of Greek yogurt into the flour mixture. Use a spatula or your hands to mix it until a sticky dough forms. This may take a minute or two—don’t worry! Your high-protein bagel bites will benefit from the moistness the yogurt provides, making them delightfully chewy.
Step 4: Shape the Dough
Once your dough is ready, divide it into 10 equal pieces, rolling each into a smooth ball. This step is key for uniform cooking. You’ll love how easy it is to handle the dough. Once you have your dough balls, prepare to give them their signature bagel shape.
Step 5: Fill with Cream Cheese
Flatten each ball gently in your palm and place about 1 teaspoon of cream cheese in the center. Fold the dough over the filling and pinch the edges securely to seal it. This step creates a delightful surprise in each bite—the creamy center is what makes these high-protein bagel bites truly irresistible!
Step 6: Prepare for Cooking
Now that your bagel bites are filled, spray them lightly with oil or brush them with an egg wash for a shiny finish. Don’t forget to sprinkle everything but the bagel seasoning generously on top for that perfect crunch and flavor. This finishing touch elevates your bagel bites from good to great!
Step 7: Arrange in the Air Fryer
Carefully place the filled bagel bites in the air fryer basket, ensuring they have some space in between each other for proper air circulation. This helps them cook evenly and achieve that crispy outer layer. Make sure not to overcrowd the basket; you may need to cook in batches.
Step 8: Air Fry the Bagel Bites
Air fry your bagel bites for 5-6 minutes, or until they are golden brown and puffed up. Keep an eye on them as they cook; they may look slightly undercooked when you pull them out—don’t worry, they will firm up as they cool. The air fryer does its magic quickly, making this snack perfect for busy days!
Step 9: Cool and Serve
Once done, remove the bagel bites from the air fryer and let them cool for a few minutes. This cooling period allows the flavors to settle and makes them more enjoyable to eat. Now, you are ready to serve these warm high-protein bagel bites to your family or guests—prepare for compliments!

Storage Tips for High-Protein Bagel Bites
- Fridge: Store your high-protein bagel bites in an airtight container for up to 4 days. Place a paper towel inside to absorb moisture, helping maintain their delightful texture.
- Freezer: These bagel bites can be frozen for up to 3 months. Freeze them on a baking sheet first, then transfer to a freezer bag to prevent sticking and maintain shape.
- Reheating: To enjoy them warm again, reheat in the air fryer at 350°F (175°C) for 3-4 minutes, ensuring a crispy finish!
What to Serve with Air Fryer High-Protein Bagel Bites
Discover the perfect companions for these delightful, protein-packed bites that transform snacking into a wholesome treat.
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Fresh Fruit Salad: A vibrant mix of seasonal fruits adds a refreshing contrast, enhancing the creamy flavor of the bagel bites perfectly.
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Greek Yogurt Parfait: Layer progressive textures by combining Greek yogurt with granola and berries, creating an exciting, protein-rich side that complements the bagels.
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Veggie Sticks with Hummus: Crisp cucumbers and crunchy carrots provide a satisfying crunch, paired beautifully with creamy hummus for added flavor and nutrition.
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Zesty Cucumber Salad: A cool, tangy cucumber salad brings bright notes to your meal while balancing the richness of the bagel bites.
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Homemade Tomato Soup: This classic pairing warms the heart and the soul, with the rich flavor of tomato soup enhancing the bite’s savory profile.
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Herbed Quinoa Salad: Nutty quinoa mixed with fresh herbs and veggies creates a wholesome side that enlivens your table and complements the bagel bites’ flavors.
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Sparkling Water with Lemon: Refreshing and light, sparkling water with a squeeze of lemon cleanses the palate and enhances your snack experience.
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Dark Chocolate Dipped Strawberries: For a sweet finish, a few dark chocolate-dipped strawberries provide a beautiful and indulgent touch to your meal.
Make Ahead Options
These Air Fryer High-Protein Bagel Bites are perfect for meal prep enthusiasts looking to save time during busy weeknights! You can prepare the dough and fill each bite with cream cheese up to 24 hours in advance by assembling them and storing them in an airtight container in the refrigerator. To maintain their delightful texture, add the everything seasoning only right before cooking. When you’re ready to enjoy these tasty snacks, simply air fry them for 5-6 minutes until golden brown. With this make-ahead option, you’ll have warm, delicious high-protein bagel bites ready to serve with minimal effort, perfect for any craving!
Expert Tips for High-Protein Bagel Bites
• Measuring Matters: Use a kitchen scale for accurate dough portions to ensure uniform cooking and texture throughout your high-protein bagel bites.
• Dough Consistency: If your dough is overly sticky, you can strain the Greek yogurt or add a bit more gluten-free flour until it’s manageable.
• Flavor Your Filling: Feel free to get adventurous! Incorporate various herbs or flavored cream cheeses to jazz up your bagel bites for a delightful twist.
• Egg Wash Option: While optional, brushing with an egg wash gives a beautiful glossy finish; if avoiding eggs, a light spray of oil works too!
• Air Fryer Space: Don’t overcrowd the air fryer basket; allowing space between the bites encourages even cooking and crispy exteriors.
• Testing Doneness: Remember, your bagel bites may seem undercooked when pulled out. They will continue to firm up as they cool—trust the process!
High-Protein Bagel Bites Customization
Feel free to have fun and tailor these bagel bites to your family’s taste preferences for a delicious twist!
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Dairy-Free: Use coconut yogurt and dairy-free cream cheese to make this recipe vegan-friendly without sacrificing flavor. Your guests will never know the difference!
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Different Flavors: Try various flavored cream cheeses, such as chive or jalapeño, to give your bagel bites an extra kick! It’s an exciting way to elevate your snacking experience.
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Herb-Infused: Mix in fresh herbs like dill or parsley into the dough for a delightful twist that adds freshness and flavor. The herb scent while cooking will make your kitchen feel cozy!
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Spicy Kick: Add crushed red pepper or cayenne for a spicy version of these bagel bites. A little heat can bring a new excitement to your snack-time routine!
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Savory Additions: Incorporate finely chopped sun-dried tomatoes or olives into the dough for an interesting Mediterranean flair. A sprinkle of Italian seasoning pairs beautifully with this idea.
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Different Flours: If gluten-free isn’t a concern, you can swap in regular all-purpose flour for a classic taste and texture. Explore what works best for your dietary needs!
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Stuffed Options: Instead of just cream cheese, consider stuffing the bites with a combination of cheese or even savory fillings, like cooked sausage or spinach, to create a hearty snack.
For even more delicious treats, don’t miss out on our Cranberry Brie Bites or the sweet surprise of Cranberry Cream Bites. Each option adds a delightful variety to your snack spread!

High-Protein Bagel Bites Recipe FAQs
How do I choose the right gluten-free flour?
Absolutely! When selecting gluten-free flour for your bagel bites, look for brands that contain xanthan gum, as this will help give your bites a better structure and prevent a gritty texture. Many people find that a blend of gluten-free flours, such as almond flour or coconut flour, can also work well to enhance flavor and texture.
How should I store the bagel bites?
You can store your high-protein bagel bites in an airtight container in the fridge for up to 4 days. Be sure to line the container with a paper towel to absorb any moisture; this handy tip helps keep the bites fluffy and prevents them from getting soggy.
Can I freeze the high-protein bagel bites?
Very! To freeze, arrange the bagel bites on a baking sheet in a single layer and freeze them for about an hour. Once they’re solid, transfer them to a freezer bag where they can stay fresh for up to 3 months. When you’re ready to enjoy them, simply reheat in your air fryer at 350°F (175°C) for about 3-4 minutes to restore that delightful crispiness.
What should I do if my dough is too sticky?
No worries! If your dough feels too sticky and hard to handle, you can either strain some moisture from the Greek yogurt or gradually mix in additional gluten-free flour, a tablespoon at a time, until it reaches a workable consistency. This way, you’ll achieve the perfect balance for handling and shaping those delicious bagel bites!
Are there any dietary considerations for these bagel bites?
Of course! If you’re vegan or avoiding dairy, you can definitely substitute the Greek yogurt with coconut yogurt and the cream cheese with a dairy-free alternative. Make sure to choose gluten-free versions of all products and seasonings if gluten is a concern. Always check labels for potential allergens that might affect you or your loved ones.

High-Protein Bagel Bites: Your New Favorite Gluten-Free Snack
Ingredients
Equipment
Method
- Preheat your air fryer to 350°F (175°C) for about 5 minutes.
- In a large mixing bowl, combine gluten-free flour, protein powder, baking powder, and a pinch of salt.
- Incorporate Greek yogurt into the flour mixture and mix until a sticky dough forms.
- Divide the dough into 10 equal pieces and roll into smooth balls.
- Flatten each ball and place cream cheese in the center, then fold the dough and pinch the edges to seal.
- Spray with oil or brush with egg wash and sprinkle everything but the bagel seasoning on top.
- Place the filled bagel bites in the air fryer basket, ensuring space between them.
- Air fry for 5-6 minutes, or until golden brown and puffed up.
- Remove from the air fryer and let cool for a few minutes before serving.

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